J3_9DP7_038

3D structure

PDB id

9DP7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Hypopseudouridylated yeast 80S bound with Taura syndrome virus (TSV) internal ribosome entry site (IRES) and hygromycin B, Class II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CCAGAC*GGGUG*UUAGACG

Length

18 nucleotides

Bulged bases

9DP7|1|B5|G|1445, 9DP7|1|B5|C|1447

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9DP7|1|B5|C|1215
9DP7|1|B5|C|1216
9DP7|1|B5|A|1217
9DP7|1|B5|G|1218
9DP7|1|B5|A|1219
9DP7|1|B5|C|1220
*
9DP7|1|B5|G|1263
9DP7|1|B5|G|1264
9DP7|1|B5|G|1265
9DP7|1|B5|U|1266
9DP7|1|B5|G|1267
*
9DP7|1|B5|U|1442
9DP7|1|B5|U|1443
9DP7|1|B5|A|1444
9DP7|1|B5|G|1445
9DP7|1|B5|A|1446
9DP7|1|B5|C|1447
9DP7|1|B5|G|1448

Current chains

Chain B5

18S rRNA

Nearby chains

Chain BK

40S ribosomal protein S10-A

Chain Bd

Small ribosomal subunit protein uS14A

Chain Bf

RPS31 isoform 1