J3_9DUK_011

3D structure

PDB id

9DUK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of mutant 30S subunit with extended helix 26, version 3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.56 Å

Loop

Sequence

CUUGACAU*ACAG*CUUACG

Length

18 nucleotides

Bulged bases

9DUK|1|A|U|1212

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9DUK_011 not in the Motif Atlas

Homologous match to J3_5J7L_053

Geometric discrepancy: 0.1897

The information below is about J3_5J7L_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76475.2

Basepair signature

cWW-tWH-F-tHS-cWW-cWW-F-cWS-cWS-cWW

Number of instances in this motif group

2

Unit IDs

9DUK|1|A|C|990
9DUK|1|A|U|991
9DUK|1|A|U|992
9DUK|1|A|G|993
9DUK|1|A|A|994
9DUK|1|A|C|995
9DUK|1|A|A|996
9DUK|1|A|U|997
*
9DUK|1|A|A|1044
9DUK|1|A|C|1045
9DUK|1|A|A|1046
9DUK|1|A|G|1047
*
9DUK|1|A|C|1210
9DUK|1|A|U|1211
9DUK|1|A|U|1212
9DUK|1|A|A|1213
9DUK|1|A|C|1214
9DUK|1|A|G|1215

Current chains

Chain A

16S rRNA

Nearby chains

Chain N

Small ribosomal subunit protein uS14