J3_9E7E_006

3D structure

PDB id

9E7E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of HIV-1 RRE SLII A31CG39C mutant in complex with Fab BL3-6

Experimental method

X-RAY DIFFRACTION

Resolution

2.75 Å

Loop

Sequence

UG*CGGUACACGCC*GAUA

Length

17 nucleotides

Bulged bases

9E7E|1|R|U|64

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9E7E_006 not in the Motif Atlas

Geometric match to J3_9C2K_001

Geometric discrepancy: 0.3957

The information below is about J3_9C2K_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_03874.1

Basepair signature

cWW-cWW-F-cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9E7E|1|R|U|8
9E7E|1|R|G|9
*
9E7E|1|R|C|32
9E7E|1|R|G|33
9E7E|1|R|G|34
9E7E|1|R|U|35
9E7E|1|R|A|36
9E7E|1|R|C|37
9E7E|1|R|A|38
9E7E|1|R|C|39
9E7E|1|R|G|40
9E7E|1|R|C|41
9E7E|1|R|C|42
*
9E7E|1|R|G|62
9E7E|1|R|A|63
9E7E|1|R|U|64
9E7E|1|R|A|65

Current chains

Chain R

Rev Response Element SLII A31C/G39C

Nearby chains