J3_9EBB_002

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EBB_002 not in the Motif Atlas

Geometric match to J3_8B0X_014

Geometric discrepancy: 0.0705

The information below is about J3_8B0X_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.3

Basepair signature

cWW-cWW-cWW-tWH-tSH-F-F

Number of instances in this motif group

11

Unit IDs

9EBB|1|I|G|30
9EBB|1|I|C|31
*
9EBB|1|I|G|563
9EBB|1|I|U|564
9EBB|1|I|G|565
9EBB|1|I|A|566
9EBB|1|I|A|567
9EBB|1|I|A|568
9EBB|1|I|A|569
9EBB|1|I|G|570
*
9EBB|1|I|C|597
9EBB|1|I|C|598

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24