J3_9EBB_003
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GUGAAAAGUAC*GAGUGAAAGAGUACC
- Length
- 28 nucleotides
- Bulged bases
- 9EBB|1|I|G|592, 9EBB|1|I|A|596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_003 not in the Motif Atlas
- Homologous match to J3_8B0X_032
- Geometric discrepancy: 0.1637
- The information below is about J3_8B0X_032
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.3
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 10
Unit IDs
9EBB|1|I|G|30
9EBB|1|I|C|31
*
9EBB|1|I|G|563
9EBB|1|I|U|564
9EBB|1|I|G|565
9EBB|1|I|A|566
9EBB|1|I|A|567
9EBB|1|I|A|568
9EBB|1|I|A|569
9EBB|1|I|G|570
9EBB|1|I|U|571
9EBB|1|I|A|572
9EBB|1|I|C|573
*
9EBB|1|I|G|584
9EBB|1|I|A|585
9EBB|1|I|G|586
9EBB|1|I|U|587
9EBB|1|I|G|588
9EBB|1|I|A|589
9EBB|1|I|A|590
9EBB|1|I|A|591
9EBB|1|I|G|592
9EBB|1|I|A|593
9EBB|1|I|G|594
9EBB|1|I|U|595
9EBB|1|I|A|596
9EBB|1|I|C|597
9EBB|1|I|C|598
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain Q
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: