J3_9EBB_019

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUCAA*UGGCGAG*CACAAG

Length

18 nucleotides

Bulged bases

9EBB|1|I|C|2572, 9EBB|1|I|A|2574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EBB_019 not in the Motif Atlas

Homologous match to J3_8B0X_037

Geometric discrepancy: 0.4998

The information below is about J3_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EBB|1|I|C|2533
9EBB|1|I|U|2534
9EBB|1|I|C|2535
9EBB|1|I|A|2536
9EBB|1|I|A|2537
*
9EBB|1|I|U|2555
9EBB|1|I|G|2556
9EBB|1|I|G|2557
9EBB|1|I|C|2558
9EBB|1|I|G|2559
9EBB|1|I|A|2560
9EBB|1|I|G|2561
*
9EBB|1|I|C|2570
9EBB|1|I|A|2571
9EBB|1|I|C|2572
9EBB|1|I|A|2573
9EBB|1|I|A|2574
9EBB|1|I|G|2575

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27