J3_9EBB_022
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GC*GGAAUAU*AGC
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_022 not in the Motif Atlas
- Geometric match to J3_4LFB_010
- Geometric discrepancy: 0.0912
- The information below is about J3_4LFB_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_58657.3
- Basepair signature
- cWW-cWW-cSW-cWW-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9EBB|1|a|G|49
9EBB|1|a|C|50
*
9EBB|1|a|G|360
9EBB|1|a|G|361
9EBB|1|a|A|362
9EBB|1|a|A|363
9EBB|1|a|U|364
9EBB|1|a|A|365
9EBB|1|a|U|366
*
9EBB|1|a|A|392
9EBB|1|a|G|393
9EBB|1|a|C|394
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain l
- 30S ribosomal protein S12
- Chain p
- 30S ribosomal protein S16
Coloring options: