J3_9EBB_029
3D structure
- PDB id
- 9EBB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- AUUAAUUC*GAAGAACCUUAC*GGCUU
- Length
- 25 nucleotides
- Bulged bases
- 9EBB|1|a|A|968, 9EBB|1|a|G|969, 9EBB|1|a|A|971
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EBB_029 not in the Motif Atlas
- Homologous match to J3_8B0X_007
- Geometric discrepancy: 0.0966
- The information below is about J3_8B0X_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_88451.3
- Basepair signature
- cWW-tWW-F-F-F-F-F-tSS-cWW-F-F-cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9EBB|1|a|A|948
9EBB|1|a|U|949
9EBB|1|a|U|950
9EBB|1|a|A|951
9EBB|1|a|A|952
9EBB|1|a|U|953
9EBB|1|a|U|954
9EBB|1|a|C|955
*
9EBB|1|a|G|966
9EBB|1|a|A|967
9EBB|1|a|A|968
9EBB|1|a|G|969
9EBB|1|a|A|970
9EBB|1|a|A|971
9EBB|1|a|C|972
9EBB|1|a|C|973
9EBB|1|a|U|974
9EBB|1|a|U|975
9EBB|1|a|A|976
9EBB|1|a|C|977
*
9EBB|1|a|G|1213
9EBB|1|a|G|1214
9EBB|1|a|C|1215
9EBB|1|a|U|1216
9EBB|1|a|U|1217
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain 9
- Small ribosomal subunit protein uS14
- Chain A
- Ribosome hibernation promoting factor
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain s
- 30S ribosomal protein S19
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