J3_9EC3_003

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUUG*CGAUAGCGGAUUAGUAC*GGAAUG

Length

27 nucleotides

Bulged bases

9EC3|1|I|U|537, 9EC3|1|I|U|545

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_003 not in the Motif Atlas

Homologous match to J3_8B0X_033

Geometric discrepancy: 0.2344

The information below is about J3_8B0X_033

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_07616.3

Basepair signature

cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH

Number of instances in this motif group

11

Unit IDs

9EC3|1|I|C|32
9EC3|1|I|U|33
9EC3|1|I|U|34
9EC3|1|I|G|35
*
9EC3|1|I|C|534
9EC3|1|I|G|535
9EC3|1|I|A|536
9EC3|1|I|U|537
9EC3|1|I|A|538
9EC3|1|I|G|539
9EC3|1|I|C|540
9EC3|1|I|G|541
9EC3|1|I|G|542
9EC3|1|I|A|543
9EC3|1|I|U|544
9EC3|1|I|U|545
9EC3|1|I|A|546
9EC3|1|I|G|547
9EC3|1|I|U|548
9EC3|1|I|A|549
9EC3|1|I|C|550
*
9EC3|1|I|G|557
9EC3|1|I|G|558
9EC3|1|I|A|559
9EC3|1|I|A|560
9EC3|1|I|U|561
9EC3|1|I|G|562

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 1

DUF5302 domain-containing protein

Chain 2

50S ribosomal protein bL34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20

Chain T

50S ribosomal protein L23