J3_9EC3_005

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GUG*CGAGUAG*UGAAUC

Length

16 nucleotides

Bulged bases

9EC3|1|I|U|319, 9EC3|1|I|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EC3|1|I|G|318
9EC3|1|I|U|319
9EC3|1|I|G|320
*
9EC3|1|I|C|458
9EC3|1|I|G|459
9EC3|1|I|A|460
9EC3|1|I|G|461
9EC3|1|I|U|462
9EC3|1|I|A|463
9EC3|1|I|G|464
*
9EC3|1|I|U|488
9EC3|1|I|G|489
9EC3|1|I|A|490
9EC3|1|I|A|491
9EC3|1|I|U|492
9EC3|1|I|C|493

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain y

Large ribosomal subunit protein bL28