J3_9EC3_009

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CAG*CGAAC*GAUG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_009 not in the Motif Atlas

Homologous match to J3_8B0X_017

Geometric discrepancy: 0.0875

The information below is about J3_8B0X_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_69816.3

Basepair signature

cWW-tHS-F-cWW-tHS-cWW-F

Number of instances in this motif group

11

Unit IDs

9EC3|1|I|C|827
9EC3|1|I|A|828
9EC3|1|I|G|829
*
9EC3|1|I|C|861
9EC3|1|I|G|862
9EC3|1|I|A|863
9EC3|1|I|A|864
9EC3|1|I|C|865
*
9EC3|1|I|G|889
9EC3|1|I|A|890
9EC3|1|I|U|891
9EC3|1|I|G|892

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2