J3_9EC3_017
3D structure
- PDB id
- 9EC3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.29 Å
Loop
- Sequence
- GCC*GAUUAGUGAUCC*GCUCAAC
- Length
- 22 nucleotides
- Bulged bases
- 9EC3|1|I|U|2628, 9EC3|1|I|A|2664
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EC3_017 not in the Motif Atlas
- Homologous match to J3_8B0X_036
- Geometric discrepancy: 0.2109
- The information below is about J3_8B0X_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9EC3|1|I|G|2520
9EC3|1|I|C|2521
9EC3|1|I|C|2522
*
9EC3|1|I|G|2622
9EC3|1|I|A|2623
9EC3|1|I|U|2624
9EC3|1|I|U|2625
9EC3|1|I|A|2626
9EC3|1|I|G|2627
9EC3|1|I|U|2628
9EC3|1|I|G|2629
9EC3|1|I|A|2630
9EC3|1|I|U|2631
9EC3|1|I|C|2632
9EC3|1|I|C|2633
*
9EC3|1|I|G|2659
9EC3|1|I|C|2660
9EC3|1|I|U|2661
9EC3|1|I|C|2662
9EC3|1|I|A|2663
9EC3|1|I|A|2664
9EC3|1|I|C|2665
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain b
- Large ribosomal subunit protein bL33
- Chain n
- Transfer RNA; tRNA
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