J3_9EC3_018

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CUCAA*UGGCGAG*CACAAG

Length

18 nucleotides

Bulged bases

9EC3|1|I|C|2572, 9EC3|1|I|A|2574

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_018 not in the Motif Atlas

Homologous match to J3_8B0X_037

Geometric discrepancy: 0.4893

The information below is about J3_8B0X_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EC3|1|I|C|2533
9EC3|1|I|U|2534
9EC3|1|I|C|2535
9EC3|1|I|A|2536
9EC3|1|I|A|2537
*
9EC3|1|I|U|2555
9EC3|1|I|G|2556
9EC3|1|I|G|2557
9EC3|1|I|C|2558
9EC3|1|I|G|2559
9EC3|1|I|A|2560
9EC3|1|I|G|2561
*
9EC3|1|I|C|2570
9EC3|1|I|A|2571
9EC3|1|I|C|2572
9EC3|1|I|A|2573
9EC3|1|I|A|2574
9EC3|1|I|G|2575

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain F

50S ribosomal protein L5

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain u

Transfer RNA; tRNA