J3_9EC3_021

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

GC*GGAAUAU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9EC3_021 not in the Motif Atlas

Geometric match to J3_4LFB_010

Geometric discrepancy: 0.1103

The information below is about J3_4LFB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.3

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9EC3|1|a|G|49
9EC3|1|a|C|50
*
9EC3|1|a|G|360
9EC3|1|a|G|361
9EC3|1|a|A|362
9EC3|1|a|A|363
9EC3|1|a|U|364
9EC3|1|a|A|365
9EC3|1|a|U|366
*
9EC3|1|a|A|392
9EC3|1|a|G|393
9EC3|1|a|C|394

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain p

30S ribosomal protein S16