J3_9EHO_001
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGAG*CUGCCCAGAGCG*CAUUC
- Length
- 21 nucleotides
- Bulged bases
- 9EHO|1|5|U|219, 9EHO|1|5|G|220, 9EHO|1|5|G|225
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|G|199
9EHO|1|5|G|200
9EHO|1|5|A|201
9EHO|1|5|G|202
*
9EHO|1|5|C|218
9EHO|1|5|U|219
9EHO|1|5|G|220
9EHO|1|5|C|221
9EHO|1|5|C|222
9EHO|1|5|C|223
9EHO|1|5|A|224
9EHO|1|5|G|225
9EHO|1|5|A|226
9EHO|1|5|G|227
9EHO|1|5|C|228
9EHO|1|5|G|229
*
9EHO|1|5|C|241
9EHO|1|5|A|242
9EHO|1|5|U|243
9EHO|1|5|U|244
9EHO|1|5|C|245
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain Y
- Large ribosomal subunit protein uL24
Coloring options: