J3_9EHO_004
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGACCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9EHO|1|5|G|416, 9EHO|1|5|C|420
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|U|387
9EHO|1|5|U|388
9EHO|1|5|G|389
9EHO|1|5|A|390
9EHO|1|5|A|391
9EHO|1|5|A|392
9EHO|1|5|A|393
9EHO|1|5|G|394
9EHO|1|5|A|395
9EHO|1|5|A|396
9EHO|1|5|C|397
*
9EHO|1|5|G|408
9EHO|1|5|A|409
9EHO|1|5|G|410
9EHO|1|5|U|411
9EHO|1|5|U|412
9EHO|1|5|C|413
9EHO|1|5|A|414
9EHO|1|5|A|415
9EHO|1|5|G|416
9EHO|1|5|A|417
9EHO|1|5|G|418
9EHO|1|5|A|419
9EHO|1|5|C|420
9EHO|1|5|C|421
9EHO|1|5|G|422
*
9EHO|1|8|C|18
9EHO|1|8|A|19
Current chains
- Chain 5
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4 C-terminal domain-containing protein
- Chain P
- Large ribosomal subunit protein uL22
- Chain Y
- Large ribosomal subunit protein uL24
- Chain l
- Large ribosomal subunit protein eL39
Coloring options: