J3_9EHO_006
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUCCA*UAG*CGAG
- Length
- 14 nucleotides
- Bulged bases
- 9EHO|1|5|U|1387, 9EHO|1|5|G|1494, 9EHO|1|5|A|1495
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|5|C|1384
9EHO|1|5|G|1385
9EHO|1|5|A|1386
9EHO|1|5|U|1387
9EHO|1|5|C|1388
9EHO|1|5|C|1389
9EHO|1|5|A|1390
*
9EHO|1|5|U|1475
9EHO|1|5|A|1476
9EHO|1|5|G|1477
*
9EHO|1|5|C|1493
9EHO|1|5|G|1494
9EHO|1|5|A|1495
9EHO|1|5|G|1496
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain A
- Large ribosomal subunit protein uL2
- Chain N
- Ribosomal protein L15
- Chain j
- Ribosomal protein L37
Coloring options: