J3_9EHO_013
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUC*GCCCAUCGAUCC*GGUGUC
- Length
- 21 nucleotides
- Bulged bases
- 9EHO|1|5|C|4293, 9EHO|1|5|U|4338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EHO_013 not in the Motif Atlas
- Homologous match to J3_9PN5_020
- Geometric discrepancy: 0.0666
- The information below is about J3_9PN5_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_04772.3
- Basepair signature
- cWW-F-tHH-cWW-tHW-tHW-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
9EHO|1|5|G|4184
9EHO|1|5|U|4185
9EHO|1|5|C|4186
*
9EHO|1|5|G|4287
9EHO|1|5|C|4288
9EHO|1|5|C|4289
9EHO|1|5|C|4290
9EHO|1|5|A|4291
9EHO|1|5|U|4292
9EHO|1|5|C|4293
9EHO|1|5|G|4294
9EHO|1|5|A|4295
9EHO|1|5|U|4296
9EHO|1|5|C|4297
9EHO|1|5|C|4298
*
9EHO|1|5|G|4334
9EHO|1|5|G|4335
9EHO|1|5|U|4336
9EHO|1|5|G|4337
9EHO|1|5|U|4338
9EHO|1|5|C|4339
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 3
- Transfer RNA; tRNA
- Chain Q
- Large ribosomal subunit protein uL15/eL18 domain-containing protein
- Chain T
- 60S ribosomal protein L21
- Chain a
- Large ribosomal subunit protein uL15
- Chain o
- Large ribosomal subunit protein eL42
Coloring options: