J3_9EHO_016

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGC*GACUUGCC*GACACG

Length

17 nucleotides

Bulged bases

9EHO|1|5|U|5105, 9EHO|1|5|C|5107

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|5|C|5085
9EHO|1|5|G|5086
9EHO|1|5|C|5087
*
9EHO|1|5|G|5101
9EHO|1|5|A|5102
9EHO|1|5|C|5103
9EHO|1|5|U|5104
9EHO|1|5|U|5105
9EHO|1|5|G|5106
9EHO|1|5|C|5107
9EHO|1|5|C|5108
*
9EHO|1|5|G|5175
9EHO|1|5|A|5176
9EHO|1|5|C|5177
9EHO|1|5|A|5178
9EHO|1|5|C|5179
9EHO|1|5|G|5180

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain P

Large ribosomal subunit protein uL22

Chain d

Large ribosomal subunit protein eL31