J3_9EHO_021
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGG*CGAAG*CG
- Length
- 10 nucleotides
- Bulged bases
- 9EHO|1|AA|A|1539
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9EHO_021 not in the Motif Atlas
- Geometric match to J3_9PN5_030
- Geometric discrepancy: 0.1496
- The information below is about J3_9PN5_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_01633.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
9EHO|1|AA|C|927
9EHO|1|AA|G|928
9EHO|1|AA|G|929
*
9EHO|1|AA|C|1536
9EHO|1|AA|G|1537
9EHO|1|AA|A|1538
9EHO|1|AA|A|1539
9EHO|1|AA|G|1540
*
9EHO|1|AA|C|1640
9EHO|1|AA|G|1641
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain II
- 40S ribosomal protein S7
- Chain MM
- 40S ribosomal protein S11
- Chain OO
- Small ribosomal subunit protein uS15
- Chain XX
- 40S ribosomal protein S15a
- Chain YY
- Small ribosomal subunit protein uS12
- Chain cc
- 40S ribosomal protein S27
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