J3_9EHO_023

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAG*CGAGCC*GCUUGCAU

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|A|1425
9EHO|1|AA|G|1426
9EHO|1|AA|A|1427
9EHO|1|AA|G|1428
*
9EHO|1|AA|C|1438
9EHO|1|AA|G|1439
9EHO|1|AA|A|1440
9EHO|1|AA|G|1441
9EHO|1|AA|C|1442
9EHO|1|AA|C|1443
*
9EHO|1|AA|G|1451
9EHO|1|AA|C|1452
9EHO|1|AA|U|1453
9EHO|1|AA|U|1454
9EHO|1|AA|G|1455
9EHO|1|AA|C|1456
9EHO|1|AA|A|1457
9EHO|1|AA|U|1458

Current chains

Chain AA

18S rRNA

Nearby chains

Chain FF

40S ribosomal protein S4

Chain KK

Small ribosomal subunit protein uS4

Chain ZZ

40S ribosomal protein S24