J3_9EHO_027
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUUAAUUU*GGGAAAACUCAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 9EHO|1|AA|G|1873, 9EHO|1|AA|A|1875, 9EHO|1|AA|A|1877
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9EHO|1|AA|C|1854
9EHO|1|AA|U|1855
9EHO|1|AA|U|1856
9EHO|1|AA|A|1857
9EHO|1|AA|A|1858
9EHO|1|AA|U|1859
9EHO|1|AA|U|1860
9EHO|1|AA|U|1861
*
9EHO|1|AA|G|1872
9EHO|1|AA|G|1873
9EHO|1|AA|G|1874
9EHO|1|AA|A|1875
9EHO|1|AA|A|1876
9EHO|1|AA|A|1877
9EHO|1|AA|A|1878
9EHO|1|AA|C|1879
9EHO|1|AA|U|1880
9EHO|1|AA|C|1881
9EHO|1|AA|A|1882
9EHO|1|AA|C|1883
*
9EHO|1|AA|G|2420
9EHO|1|AA|G|2421
9EHO|1|AA|C|2422
9EHO|1|AA|C|2423
9EHO|1|AA|G|2424
Current chains
- Chain AA
- 18S rRNA
Nearby chains
- Chain 2
- Transfer RNA; tRNA
- Chain QQ
- Small ribosomal subunit protein uS19
- Chain TT
- Small ribosomal subunit protein uS13
- Chain VV
- Small ribosomal subunit protein uS10
- Chain ee
- Small ribosomal subunit protein uS14
Coloring options: