J3_9EHO_028

3D structure

PDB id

9EHO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Octopus ribosome, hybrid 80S

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCGGAC*GGGUG*UUAGAUG

Length

18 nucleotides

Bulged bases

9EHO|1|AA|G|1891, 9EHO|1|AA|G|2411, 9EHO|1|AA|U|2413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9EHO|1|AA|C|1889
9EHO|1|AA|C|1890
9EHO|1|AA|G|1891
9EHO|1|AA|G|1892
9EHO|1|AA|A|1893
9EHO|1|AA|C|1894
*
9EHO|1|AA|G|1937
9EHO|1|AA|G|1938
9EHO|1|AA|G|1939
9EHO|1|AA|U|1940
9EHO|1|AA|G|1941
*
9EHO|1|AA|U|2408
9EHO|1|AA|U|2409
9EHO|1|AA|A|2410
9EHO|1|AA|G|2411
9EHO|1|AA|A|2412
9EHO|1|AA|U|2413
9EHO|1|AA|G|2414

Current chains

Chain AA

18S rRNA

Nearby chains

Chain LL

Plectin/eS10 N-terminal domain-containing protein

Chain ee

Small ribosomal subunit protein uS14