J3_9F1B_029
3D structure
- PDB id
- 9F1B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian ternary complex of a translating 80S ribosome, NAC and NatA/E
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.01 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 9F1B|1|A2|G|1257, 9F1B|1|A2|A|1259
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1B_029 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.081
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
9F1B|1|A2|C|1238
9F1B|1|A2|PSU|1239
9F1B|1|A2|U|1240
9F1B|1|A2|A|1241
9F1B|1|A2|A|1242
9F1B|1|A2|U|1243
9F1B|1|A2|U|1244
9F1B|1|A2|PSU|1245
*
9F1B|1|A2|G|1256
9F1B|1|A2|G|1257
9F1B|1|A2|G|1258
9F1B|1|A2|A|1259
9F1B|1|A2|A|1260
9F1B|1|A2|A|1261
9F1B|1|A2|C|1262
9F1B|1|A2|C|1263
9F1B|1|A2|U|1264
9F1B|1|A2|C|1265
9F1B|1|A2|A|1266
9F1B|1|A2|C|1267
*
9F1B|1|A2|G|1517
9F1B|1|A2|G|1518
9F1B|1|A2|C|1519
9F1B|1|A2|U|1520
9F1B|1|A2|G|1521
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AC
- Ribosomal protein S27a
- Chain AG
- 40S ribosomal protein S29
- Chain Ao
- 40S ribosomal protein uS19
- Chain Ar
- 40S ribosomal protein S18
- Chain At
- Small ribosomal subunit protein uS10
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