J3_9F1C_025

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

9F1C|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1C|1|A2|C|223
9F1C|1|A2|A|224
9F1C|1|A2|G|225
9F1C|1|A2|A|226
9F1C|1|A2|U|227
9F1C|1|A2|C|228
9F1C|1|A2|A|229
9F1C|1|A2|A|230
9F1C|1|A2|A|231
9F1C|1|A2|A|232
9F1C|1|A2|C|233
9F1C|1|A2|C|234
9F1C|1|A2|A|235
9F1C|1|A2|A|236
9F1C|1|A2|C|237
9F1C|1|A2|C|238
9F1C|1|A2|C|239
*
9F1C|1|A2|G|280
9F1C|1|A2|G|281
9F1C|1|A2|C|282
9F1C|1|A2|G|283
9F1C|1|A2|G|284
9F1C|1|A2|C|285
9F1C|1|A2|U|286
9F1C|1|A2|U|287
9F1C|1|A2|U|288
9F1C|1|A2|G|289
*
9F1C|1|A2|C|296
9F1C|1|A2|U|297
9F1C|1|A2|A|298
9F1C|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11