J3_9F1D_022

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CA(PSU)UCG*CCUGCUUCU*AAGG

Length

19 nucleotides

Bulged bases

9F1D|1|B5|U|4728

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|C|4709
9F1D|1|B5|A|4710
9F1D|1|B5|PSU|4711
9F1D|1|B5|U|4712
9F1D|1|B5|C|4713
9F1D|1|B5|G|4714
*
9F1D|1|B5|C|4722
9F1D|1|B5|C|4723
9F1D|1|B5|U|4724
9F1D|1|B5|G|4725
9F1D|1|B5|C|4726
9F1D|1|B5|U|4727
9F1D|1|B5|U|4728
9F1D|1|B5|C|4729
9F1D|1|B5|U|4730
*
9F1D|1|B5|A|4799
9F1D|1|B5|A|4800
9F1D|1|B5|G|4801
9F1D|1|B5|G|4802

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

Large ribosomal subunit protein uL22

Chain Bd

60S ribosomal protein L31