J3_9F1D_024

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AAC*GAGAAUU*ACACUU

Length

16 nucleotides

Bulged bases

9F1D|1|B8|A|62, 9F1D|1|B8|U|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B8|A|43
9F1D|1|B8|A|44
9F1D|1|B8|C|45
*
9F1D|1|B8|G|58
9F1D|1|B8|A|59
9F1D|1|B8|G|60
9F1D|1|B8|A|61
9F1D|1|B8|A|62
9F1D|1|B8|U|63
9F1D|1|B8|U|64
*
9F1D|1|B8|A|95
9F1D|1|B8|C|96
9F1D|1|B8|A|97
9F1D|1|B8|C|98
9F1D|1|B8|U|99
9F1D|1|B8|U|100

Current chains

Chain B8

5.8S rRNA

Nearby chains

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BX

Large ribosomal subunit protein uL23

Chain Bh

60S ribosomal protein L35

Chain Bj

Ribosomal protein L37

Chain Bl

60S ribosomal protein L39-like