J3_9F1D_027

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAGAUCAAAACCAACCC*GGCGGCUUUG*CUAG

Length

31 nucleotides

Bulged bases

9F1D|1|A2|A|226, 9F1D|1|A2|U|227, 9F1D|1|A2|C|228

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|A2|C|223
9F1D|1|A2|A|224
9F1D|1|A2|G|225
9F1D|1|A2|A|226
9F1D|1|A2|U|227
9F1D|1|A2|C|228
9F1D|1|A2|A|229
9F1D|1|A2|A|230
9F1D|1|A2|A|231
9F1D|1|A2|A|232
9F1D|1|A2|C|233
9F1D|1|A2|C|234
9F1D|1|A2|A|235
9F1D|1|A2|A|236
9F1D|1|A2|C|237
9F1D|1|A2|C|238
9F1D|1|A2|C|239
*
9F1D|1|A2|G|280
9F1D|1|A2|G|281
9F1D|1|A2|C|282
9F1D|1|A2|G|283
9F1D|1|A2|G|284
9F1D|1|A2|C|285
9F1D|1|A2|U|286
9F1D|1|A2|U|287
9F1D|1|A2|U|288
9F1D|1|A2|G|289
*
9F1D|1|A2|C|296
9F1D|1|A2|U|297
9F1D|1|A2|A|298
9F1D|1|A2|G|299

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ad

40S ribosomal protein S4

Chain Af

40S ribosomal protein S6

Chain Ah

40S ribosomal protein S8

Chain Ak

40S ribosomal protein S11