J3_9F1D_037
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 9F1D|1|B5|G|409, 9F1D|1|B5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_9F1D_037 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3109
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
9F1D|1|B5|U|380
9F1D|1|B5|U|381
9F1D|1|B5|G|382
9F1D|1|B5|A|383
9F1D|1|B5|A|384
9F1D|1|B5|A|385
9F1D|1|B5|A|386
9F1D|1|B5|G|387
9F1D|1|B5|A|388
9F1D|1|B5|A|389
9F1D|1|B5|C|390
*
9F1D|1|B5|G|401
9F1D|1|B5|A|402
9F1D|1|B5|G|403
9F1D|1|B5|U|404
9F1D|1|B5|U|405
9F1D|1|B5|C|406
9F1D|1|B5|A|407
9F1D|1|B5|A|408
9F1D|1|B5|G|409
9F1D|1|B5|A|410
9F1D|1|B5|G|411
9F1D|1|B5|G|412
9F1D|1|B5|G|413
9F1D|1|B5|C|414
9F1D|1|B5|G|415
*
9F1D|1|B8|C|19
9F1D|1|B8|A|20
Current chains
- Chain B5
- 28S rRNA
- Chain B8
- 5.8S rRNA
Nearby chains
- Chain BC
- 60S ribosomal protein L4
- Chain BK
- Nascent chain
- Chain BP
- Large ribosomal subunit protein uL22
- Chain BY
- Ribosomal protein L26
- Chain Bl
- 60S ribosomal protein L39-like
- Chain Cu
- Transcription factor BTF3
- Chain DB
- N-alpha-acetyltransferase 15, NatA auxiliary subunit
Coloring options: