J3_9F1D_038

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAGUC*GUGCG*CGAUG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F1D|1|B5|C|451
9F1D|1|B5|A|452
9F1D|1|B5|G|453
9F1D|1|B5|U|454
9F1D|1|B5|C|455
*
9F1D|1|B5|G|695
9F1D|1|B5|U|696
9F1D|1|B5|G|697
9F1D|1|B5|C|698
9F1D|1|B5|G|699
*
9F1D|1|B5|C|1236
9F1D|1|B5|G|1237
9F1D|1|B5|A|1238
9F1D|1|B5|U|1239
9F1D|1|B5|G|1240

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain Be

Ribosomal protein L32

Chain Bf

60S ribosomal protein L35a