J3_9FBV_031

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

9FBV|1|a|U|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_9FBV_031 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.042

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9FBV|1|a|G|297
9FBV|1|a|G|298
9FBV|1|a|A|299
9FBV|1|a|A|300
9FBV|1|a|G|301
*
9FBV|1|a|C|316
9FBV|1|a|G|317
9FBV|1|a|C|318
9FBV|1|a|G|319
9FBV|1|a|A|320
9FBV|1|a|U|321
9FBV|1|a|A|322
9FBV|1|a|C|323
9FBV|1|a|A|324
9FBV|1|a|G|325
*
9FBV|1|a|C|337
9FBV|1|a|G|338
9FBV|1|a|U|339
9FBV|1|a|A|340
9FBV|1|a|C|341

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24