J3_9FN3_001

3D structure

PDB id

9FN3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the alkyltransferase ribozyme SAMURI co-crystalized with ProSeDMA

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CAUGGC*GUC*G(A1ID5)G

Length

12 nucleotides

Bulged bases

9FN3|1|A|G|10, 9FN3|1|A|A1ID5|52

QA status

Modified nucleotides: A1ID5

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FN3|1|A|C|6
9FN3|1|A|A|7
9FN3|1|A|U|8
9FN3|1|A|G|9
9FN3|1|A|G|10
9FN3|1|A|C|11
*
9FN3|1|A|G|36
9FN3|1|A|U|37
9FN3|1|A|C|38
*
9FN3|1|A|G|51
9FN3|1|A|A1ID5|52
9FN3|1|A|G|53

Current chains

Chain A

SAMURI-ProSeDMA

Nearby chains

Chain B

SAMURI-ProSeDMA