J3_9FQZ_002

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

9FQZ|1|L5|A|218, 9FQZ|1|L5|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FQZ|1|L5|C|196
9FQZ|1|L5|A|197
9FQZ|1|L5|A|198
9FQZ|1|L5|G|199
*
9FQZ|1|L5|C|215
9FQZ|1|L5|C|216
9FQZ|1|L5|C|217
9FQZ|1|L5|A|218
9FQZ|1|L5|G|219
9FQZ|1|L5|C|220
9FQZ|1|L5|C|221
9FQZ|1|L5|C|222
9FQZ|1|L5|G|223
9FQZ|1|L5|U|224
9FQZ|1|L5|G|225
9FQZ|1|L5|G|226
9FQZ|1|L5|A|227
9FQZ|1|L5|C|228
*
9FQZ|1|L5|G|240
9FQZ|1|L5|G|241
9FQZ|1|L5|U|242
9FQZ|1|L5|A|243
9FQZ|1|L5|G|244

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LY

60S ribosomal protein L26