J3_9FQZ_007

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

9FQZ|1|L5|G|959, 9FQZ|1|L5|G|965, 9FQZ|1|L5|C|967, 9FQZ|1|L5|C|968, 9FQZ|1|L5|C|969, 9FQZ|1|L5|U|971, 9FQZ|1|L5|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FQZ|1|L5|C|712
9FQZ|1|L5|C|713
*
9FQZ|1|L5|G|955
9FQZ|1|L5|A|956
9FQZ|1|L5|G|957
9FQZ|1|L5|G|958
9FQZ|1|L5|G|959
9FQZ|1|L5|A|960
9FQZ|1|L5|G|961
9FQZ|1|L5|C|962
9FQZ|1|L5|G|963
9FQZ|1|L5|A|964
9FQZ|1|L5|G|965
9FQZ|1|L5|A|966
9FQZ|1|L5|C|967
9FQZ|1|L5|C|968
9FQZ|1|L5|C|969
9FQZ|1|L5|G|970
9FQZ|1|L5|U|971
9FQZ|1|L5|C|972
9FQZ|1|L5|G|973
9FQZ|1|L5|C|974
9FQZ|1|L5|C|975
9FQZ|1|L5|G|976
*
9FQZ|1|L5|C|1278
9FQZ|1|L5|A|1279
9FQZ|1|L5|C|1280
9FQZ|1|L5|G|1281
9FQZ|1|L5|G|1282
9FQZ|1|L5|G|1283
9FQZ|1|L5|G|1284

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LE

60S ribosomal protein L6

Chain LF

Large ribosomal subunit protein uL30

Chain Le

60S ribosomal protein L32