J3_9FQZ_013

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GAAG*CC(A2M)UAUC*GUC

Length

14 nucleotides

Bulged bases

9FQZ|1|L5|U|2788, 9FQZ|1|L5|A|2789

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FQZ|1|L5|G|2402
9FQZ|1|L5|A|2403
9FQZ|1|L5|A|2404
9FQZ|1|L5|G|2405
*
9FQZ|1|L5|C|2785
9FQZ|1|L5|C|2786
9FQZ|1|L5|A2M|2787
9FQZ|1|L5|U|2788
9FQZ|1|L5|A|2789
9FQZ|1|L5|U|2790
9FQZ|1|L5|C|2791
*
9FQZ|1|L5|G|2800
9FQZ|1|L5|U|2801
9FQZ|1|L5|C|2802

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lj

60S ribosomal protein L37

Chain Ll

60S ribosomal protein L39