J3_9FQZ_023

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

9FQZ|1|L5|U|4882, 9FQZ|1|L5|A|4938, 9FQZ|1|L5|C|4940, 9FQZ|1|L5|A|4943, 9FQZ|1|L5|C|4944

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FQZ|1|L5|G|4751
9FQZ|1|L5|U|4752
9FQZ|1|L5|U|4753
9FQZ|1|L5|G|4754
*
9FQZ|1|L5|C|4879
9FQZ|1|L5|C|4880
9FQZ|1|L5|U|4881
9FQZ|1|L5|U|4882
9FQZ|1|L5|C|4883
*
9FQZ|1|L5|G|4936
9FQZ|1|L5|C|4937
9FQZ|1|L5|A|4938
9FQZ|1|L5|C|4939
9FQZ|1|L5|C|4940
9FQZ|1|L5|G|4941
9FQZ|1|L5|C|4942
9FQZ|1|L5|A|4943
9FQZ|1|L5|C|4944
9FQZ|1|L5|G|4945
9FQZ|1|L5|U|4946
9FQZ|1|L5|U|4947
9FQZ|1|L5|C|4948

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LE

60S ribosomal protein L6

Chain LM

60S ribosomal protein L14

Chain LO

60S ribosomal protein L13a

Chain Lf

60S ribosomal protein L35a