J3_9FRA_003

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(OMG)G*CUAG*CG

Length

9 nucleotides

Bulged bases

9FRA|1|2|A|612

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|C|545
9FRA|1|2|OMG|546
9FRA|1|2|G|547
*
9FRA|1|2|C|610
9FRA|1|2|U|611
9FRA|1|2|A|612
9FRA|1|2|G|613
*
9FRA|1|2|C|713
9FRA|1|2|G|714

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain I

Small ribosomal subunit protein uS8

Chain N

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein eS27