J3_9FRA_005

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CG*CACCAGUGG*CGG

Length

14 nucleotides

Bulged bases

9FRA|1|2|U|682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|C|631
9FRA|1|2|G|632
*
9FRA|1|2|C|676
9FRA|1|2|A|677
9FRA|1|2|C|678
9FRA|1|2|C|679
9FRA|1|2|A|680
9FRA|1|2|G|681
9FRA|1|2|U|682
9FRA|1|2|G|683
9FRA|1|2|G|684
*
9FRA|1|2|C|691
9FRA|1|2|G|692
9FRA|1|2|G|693

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain A

Small ribosomal subunit protein eS1

Chain M

Small ribosomal subunit protein uS11

Chain s

mRNA_Map