J3_9FRA_007

3D structure

PDB id

9FRA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRA|1|2|C|900
9FRA|1|2|A|901
9FRA|1|2|A|902
9FRA|1|2|G|903
*
9FRA|1|2|C|1308
9FRA|1|2|U|1309
9FRA|1|2|A|1310
9FRA|1|2|G|1311
9FRA|1|2|U|1312
9FRA|1|2|A|1313
9FRA|1|2|A|1314
*
9FRA|1|2|U|1336
9FRA|1|2|G|1337
9FRA|1|2|A|1338
9FRA|1|2|A|1339
9FRA|1|2|U|1340
9FRA|1|2|A|1341
9FRA|1|2|C|1342
9FRA|1|2|G|1343

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain X

Small ribosomal subunit protein eS28