J3_9FRA_009
3D structure
- PDB id
- 9FRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to Ss-MAP leaderless mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAAUU(OMG)*CUGGAAUCUUAC*GGCCG
- Length
- 25 nucleotides
- Bulged bases
- 9FRA|1|2|U|938, 9FRA|1|2|G|940, 9FRA|1|2|A|942
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9FRA|1|2|C|919
9FRA|1|2|U|920
9FRA|1|2|C|921
9FRA|1|2|A|922
9FRA|1|2|A|923
9FRA|1|2|U|924
9FRA|1|2|U|925
9FRA|1|2|OMG|926
*
9FRA|1|2|C|937
9FRA|1|2|U|938
9FRA|1|2|G|939
9FRA|1|2|G|940
9FRA|1|2|A|941
9FRA|1|2|A|942
9FRA|1|2|U|943
9FRA|1|2|C|944
9FRA|1|2|U|945
9FRA|1|2|U|946
9FRA|1|2|A|947
9FRA|1|2|C|948
*
9FRA|1|2|G|1184
9FRA|1|2|G|1185
9FRA|1|2|C|1186
9FRA|1|2|C|1187
9FRA|1|2|G|1188
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain K
- Small ribosomal subunit protein uS9
- Chain L
- Small ribosomal subunit protein uS10
- Chain O
- Small ribosomal subunit protein uS13
- Chain P
- Small ribosomal subunit protein uS14
- Chain T
- Small ribosomal subunit protein uS19
- Chain c
- Small ribosomal subunit protein eS25
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