J3_9FRK_004

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

C(OMG)G*CUAGG*(OMC)GACG

Length

13 nucleotides

Bulged bases

9FRK|1|2|A|612

QA status

Modified nucleotides: OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|C|545
9FRK|1|2|OMG|546
9FRK|1|2|G|547
*
9FRK|1|2|C|610
9FRK|1|2|U|611
9FRK|1|2|A|612
9FRK|1|2|G|613
9FRK|1|2|G|614
*
9FRK|1|2|OMC|710
9FRK|1|2|G|711
9FRK|1|2|A|712
9FRK|1|2|C|713
9FRK|1|2|G|714

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain I

Small ribosomal subunit protein uS8

Chain N

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS15

Chain R

Small ribosomal subunit protein uS17

Chain W

Small ribosomal subunit protein eS27