J3_9FRK_005

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CG*CACCAGUGG*CGG

Length

14 nucleotides

Bulged bases

9FRK|1|2|U|682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|C|631
9FRK|1|2|G|632
*
9FRK|1|2|C|676
9FRK|1|2|A|677
9FRK|1|2|C|678
9FRK|1|2|C|679
9FRK|1|2|A|680
9FRK|1|2|G|681
9FRK|1|2|U|682
9FRK|1|2|G|683
9FRK|1|2|G|684
*
9FRK|1|2|C|691
9FRK|1|2|G|692
9FRK|1|2|G|693

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 5

mRNA aEF1A

Chain A

Small ribosomal subunit protein eS1

Chain M

Small ribosomal subunit protein uS11