J3_9FRK_006
3D structure
- PDB id
- 9FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUAG*CGCAG*CGUUAAG
- Length
- 16 nucleotides
- Bulged bases
- 9FRK|1|2|U|834, 9FRK|1|2|A|836
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9FRK|1|2|C|785
9FRK|1|2|U|786
9FRK|1|2|A|787
9FRK|1|2|G|788
*
9FRK|1|2|C|820
9FRK|1|2|G|821
9FRK|1|2|C|822
9FRK|1|2|A|823
9FRK|1|2|G|824
*
9FRK|1|2|C|831
9FRK|1|2|G|832
9FRK|1|2|U|833
9FRK|1|2|U|834
9FRK|1|2|A|835
9FRK|1|2|A|836
9FRK|1|2|G|837
Current chains
- Chain 2
- rRNA 16S
Nearby chains
- Chain 5
- mRNA aEF1A
- Chain B
- Small ribosomal subunit protein uS2
- Chain C
- Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein
- Chain F
- Small ribosomal subunit protein uS5
- Chain I
- Small ribosomal subunit protein uS8
- Chain N
- Small ribosomal subunit protein uS12
- Chain Q
- Small ribosomal subunit protein uS15
- Chain W
- Small ribosomal subunit protein eS27
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