J3_9FRK_007

3D structure

PDB id

9FRK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRK|1|2|C|900
9FRK|1|2|A|901
9FRK|1|2|A|902
9FRK|1|2|G|903
*
9FRK|1|2|C|1308
9FRK|1|2|U|1309
9FRK|1|2|A|1310
9FRK|1|2|G|1311
9FRK|1|2|U|1312
9FRK|1|2|A|1313
9FRK|1|2|A|1314
*
9FRK|1|2|U|1336
9FRK|1|2|G|1337
9FRK|1|2|A|1338
9FRK|1|2|A|1339
9FRK|1|2|U|1340
9FRK|1|2|A|1341
9FRK|1|2|C|1342
9FRK|1|2|G|1343

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain X

Small ribosomal subunit protein eS28