J3_9FRL_002

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

GGGCUAAG*CGCGAAACG*C(OMG)C

Length

20 nucleotides

Bulged bases

9FRL|1|2|A|47

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|G|41
9FRL|1|2|G|42
9FRL|1|2|G|43
9FRL|1|2|C|44
9FRL|1|2|U|45
9FRL|1|2|A|46
9FRL|1|2|A|47
9FRL|1|2|G|48
*
9FRL|1|2|C|364
9FRL|1|2|G|365
9FRL|1|2|C|366
9FRL|1|2|G|367
9FRL|1|2|A|368
9FRL|1|2|A|369
9FRL|1|2|A|370
9FRL|1|2|C|371
9FRL|1|2|G|372
*
9FRL|1|2|C|398
9FRL|1|2|OMG|399
9FRL|1|2|C|400

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain N

Small ribosomal subunit protein uS12