J3_9FRL_005

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CG*CACCAGUGG*CGG

Length

14 nucleotides

Bulged bases

9FRL|1|2|U|682

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|631
9FRL|1|2|G|632
*
9FRL|1|2|C|676
9FRL|1|2|A|677
9FRL|1|2|C|678
9FRL|1|2|C|679
9FRL|1|2|A|680
9FRL|1|2|G|681
9FRL|1|2|U|682
9FRL|1|2|G|683
9FRL|1|2|G|684
*
9FRL|1|2|C|691
9FRL|1|2|G|692
9FRL|1|2|G|693

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain 5

mRNA

Chain A

Small ribosomal subunit protein eS1

Chain M

Small ribosomal subunit protein uS11