3D structure

PDB id
9FRL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position
Experimental method
ELECTRON MICROSCOPY
Resolution
2.97 Å

Loop

Sequence
CUAG*CGCAG*CGUUAAG
Length
16 nucleotides
Bulged bases
9FRL|1|2|U|834, 9FRL|1|2|A|836
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9FRL|1|2|C|785
9FRL|1|2|U|786
9FRL|1|2|A|787
9FRL|1|2|G|788
*
9FRL|1|2|C|820
9FRL|1|2|G|821
9FRL|1|2|C|822
9FRL|1|2|A|823
9FRL|1|2|G|824
*
9FRL|1|2|C|831
9FRL|1|2|G|832
9FRL|1|2|U|833
9FRL|1|2|U|834
9FRL|1|2|A|835
9FRL|1|2|A|836
9FRL|1|2|G|837

Current chains

Chain 2
rRNA 16S

Nearby chains

Chain 5
mRNA
Chain B
Small ribosomal subunit protein uS2
Chain C
Small zinc finger protein HVO-2753-like zinc-binding pocket domain-containing protein
Chain F
Small ribosomal subunit protein uS5
Chain I
Small ribosomal subunit protein uS8
Chain N
Small ribosomal subunit protein uS12
Chain Q
Small ribosomal subunit protein uS15
Chain W
Small ribosomal subunit protein eS27

Coloring options:

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