J3_9FRL_007

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CAAG*CUAGUAA*UGAAUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|900
9FRL|1|2|A|901
9FRL|1|2|A|902
9FRL|1|2|G|903
*
9FRL|1|2|C|1308
9FRL|1|2|U|1309
9FRL|1|2|A|1310
9FRL|1|2|G|1311
9FRL|1|2|U|1312
9FRL|1|2|A|1313
9FRL|1|2|A|1314
*
9FRL|1|2|U|1336
9FRL|1|2|G|1337
9FRL|1|2|A|1338
9FRL|1|2|A|1339
9FRL|1|2|U|1340
9FRL|1|2|A|1341
9FRL|1|2|C|1342
9FRL|1|2|G|1343

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain H

Small ribosomal subunit protein uS7

Chain K

Small ribosomal subunit protein uS9

Chain X

Small ribosomal subunit protein eS28