3D structure

PDB id
9FRL (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position
Experimental method
ELECTRON MICROSCOPY
Resolution
2.97 Å

Loop

Sequence
UGGA*UAC*GGAA
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

9FRL|1|2|U|907
9FRL|1|2|G|908
9FRL|1|2|G|909
9FRL|1|2|A|910
*
9FRL|1|2|U|1198
9FRL|1|2|A|1199
9FRL|1|2|C|1200
*
9FRL|1|2|G|1301
9FRL|1|2|G|1302
9FRL|1|2|A|1303
9FRL|1|2|A|1304

Current chains

Chain 2
rRNA 16S

Nearby chains

Chain 4
Transfer RNA; tRNA
Chain H
Small ribosomal subunit protein uS7
Chain K
Small ribosomal subunit protein uS9
Chain O
Small ribosomal subunit protein uS13
Chain U
Small ribosomal subunit protein eS19

Coloring options:

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