J3_9FRL_009

3D structure

PDB id

9FRL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Saccharolobus solfataricus 30S initiation complex bound to SD mRNA with h44 in up position

Experimental method

ELECTRON MICROSCOPY

Resolution

2.97 Å

Loop

Sequence

CUCAAUU(OMG)*CUGGAAUCUUAC*GGCCG

Length

25 nucleotides

Bulged bases

9FRL|1|2|U|938, 9FRL|1|2|G|940, 9FRL|1|2|A|942

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FRL|1|2|C|919
9FRL|1|2|U|920
9FRL|1|2|C|921
9FRL|1|2|A|922
9FRL|1|2|A|923
9FRL|1|2|U|924
9FRL|1|2|U|925
9FRL|1|2|OMG|926
*
9FRL|1|2|C|937
9FRL|1|2|U|938
9FRL|1|2|G|939
9FRL|1|2|G|940
9FRL|1|2|A|941
9FRL|1|2|A|942
9FRL|1|2|U|943
9FRL|1|2|C|944
9FRL|1|2|U|945
9FRL|1|2|U|946
9FRL|1|2|A|947
9FRL|1|2|C|948
*
9FRL|1|2|G|1184
9FRL|1|2|G|1185
9FRL|1|2|C|1186
9FRL|1|2|C|1187
9FRL|1|2|G|1188

Current chains

Chain 2

rRNA 16S

Nearby chains

Chain L

Small ribosomal subunit protein uS10

Chain O

Small ribosomal subunit protein uS13

Chain P

Small ribosomal subunit protein uS14

Chain T

Small ribosomal subunit protein uS19

Chain c

Small ribosomal subunit protein eS25